Advanced Analysis - SPADE, FlowSOM, viSNE, and CITRUS
Clustering, dimensionality reduction, and predictive modeling to get the most from your data.
Articles on FlowSOM
Articles on SPADE
- Overview and introduction to SPADE
- How to Configure and Run a SPADE Analysis
- SPADE with fold change: overview, setup, and analysis
- Analysis and Interpretation of SPADE Results
- SPADE metrics: Median, Raw Median, Fold, Raw Fold, and CV
- Export images of a SPADE tree
Articles on viSNE
- Introduction to viSNE in Cytobank
- How to Configure and Run a viSNE Analysis
- Analysis and Interpretation of viSNE Results
- How to Concatenate viSNE files for Analysis
- FlowSOM, SPADE, and CITRUS on viSNE: Automatically Categorize viSNE Populations
- viSNE FAQ