Advanced Analysis - SPADE, FlowSOM, viSNE, and CITRUS
Clustering, dimensionality reduction, and predictive modeling to get the most from your data.
Articles on FlowSOM
- Introduction to FlowSOM in Cytobank
- How to Configure and Run a FlowSOM Analysis
- Analysis and Interpretation of FlowSOM Results
- The Effect of FlowSOM Settings on Run Time
- FlowSOM FAQ
Articles on SPADE
- Overview and introduction to SPADE
- How to Configure and Run a SPADE Analysis
- SPADE with fold change: overview, setup, and analysis
- Analysis and Interpretation of SPADE Results
- SPADE metrics: Median, Raw Median, Fold, Raw Fold, and CV
- Export images of a SPADE tree
Articles on viSNE
- Introduction to viSNE in Cytobank
- How to Configure and Run a viSNE Analysis
- Analysis and interpretation of viSNE results
- How to Concatenate viSNE files for Analysis
- FlowSOM, SPADE, and CITRUS on viSNE: automatically categorize viSNE populations
- viSNE FAQ
Articles on CITRUS
- Overview of CITRUS
- How to Configure and Run a CITRUS Analysis
- Analysis and Intepretation of CITRUS Results
- Exporting Clusters from a CITRUS Analysis as New FCS Files