Advanced Analysis - Dimensionality Reduction, Clustering, Autogating and CITRUS
Dimensionality reduction, Clustering, and predictive modeling to get the most from your data.
Articles on Dimensionality Reduction Suite
- Introduction to the dimensionality reduction suite in the Cytobank platform
- How to configure and run a dimensionality reduction analysis
- Analysis and interpretation of the dimensionality reduction (DR) results
- Comparison of the dimensionality reduction results within the Settings page
- How to concatenate dimensionality reduction files for analysis
- FlowSOM, SPADE, and CITRUS on dimensionality reduction: automatically categorize dimensionality reduction populations
Articles on Automatic Gating
- Introduction to the Automatic gating algorithm
- How to set up a new automatic gating analysis by training a new model
- How to set up a new automatic gating analysis by running inference using trained model
- How to interpret the automatic gating results
- Performance and benchmark run times for Autogating training and inference runs
Articles on FlowSOM
- Introduction to FlowSOM in Cytobank
- How to Configure and Run a FlowSOM Analysis
- Analysis and Interpretation of FlowSOM Results
- The Effect of FlowSOM Settings on Run Time
- FlowSOM FAQ
Articles on SPADE
- Overview and introduction to SPADE
- How to Configure and Run a SPADE Analysis
- SPADE with fold change: overview, setup, and analysis
- Analysis and Interpretation of SPADE Results
- SPADE metrics: Median, Raw Median, Fold, Raw Fold, and CV
- Export images of a SPADE tree
Articles on CITRUS
- Overview of CITRUS
- How to Configure and Run a CITRUS Analysis
- Analysis and Intepretation of CITRUS Results
- Exporting Clusters from a CITRUS Analysis as New FCS Files